Table 2 Associated bins at FDR 5% threshold (top), at FDR 50% threshold before (middle) and after exclusion of MHC region bins (bottom). A, B, C, ABC: collection designs, L2: two-marker likelihood, L3: naive likelihood.
From: Gene-based bin analysis of genome-wide association studies
FDR 5% with MHC | L 3 | L 2 |
|---|---|---|
A | 3 | 2 |
B | 3 | 6 |
C | 2 | 2 |
ABC | 4 | 6 |
FDR 50% with MHC | L 3 | L 2 |
A | 6 | 6 |
B | 14 | 7 |
C | 6 | 28 |
ABC | 20 | 33 |
FDR 50% w/o MHC | L 3 | L 2 |
A | 2 | 0 |
B | 1 | 1 |
C | 0 | 0 |
ABC | 8 | 10 |