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Table 2 Top significant epistatic interactions with P < 10-6 and distance between SNPs <10 cM.

From: Data modeling as a main source of discrepancies in single and multiple marker association methods

Epistasis

SNP_1

SNP_2

-log10 p-value

r2

Distance

AxA

3512

3652

6.59

1.6 × 10-2

14 cM

 

3083

5023

6.32

5.8 × 10-5

Diff. chr

 

1002

5847

6.21

1.6 × 10-4

Diff. chr

AxD

1546

1652

6.58

2 × 10-2

19.1 cM

 

1843

3248

6.02

1.3 × 10-3

Diff. chr

DxA

1308

1411

6.12

1.1 × 10-2

10.3 cM

DxD

3939

5524

6.32

7.2 × 10-4

Diff. chr

  1. r2 is the correlation between SNPs