A search for non-chromosome 6 susceptibility loci contributing to rheumatoid arthritis

BMC Proceedings

Table 3 Results of the GWA analyses for SNPs that differed between the comparison groups at p < 0.0001: minor allele frequency in LL cases

SNP	LL cases	HH cases	LL controls	Physically closes gene
LL cases vs. HH cases
rs10498105^a	0.306	0.66	-	*EPHA4*
rs2398966	0.111	0.469	-	*AC012154.16*
rs2293004	0.361	0.699	-	AADAC
rs7664880	0.361	0.704	-	*AC096566.2*
rs1845344	0.389	0.727	-	MAD2L1
rs7447161	0.083	0.396	-	*FER*
rs1350309	0.028	0.298	-	AC019176.4
rs3731239	0.333	0.687	-	CDKN2A
rs10813797	0.278	0.625	-	ACO1
rs7865082	0.361	0.713	-	DDX58
rs2793471	0.222	0.564	-	*AL135933.11*
rs2611279	0.111	0.426	-	*SLC6A15*
rs7967594	0.111	0.426	-	*SLC6A15*
rs2148443	0.139	0.497	-	TMFRSF19
rs2567506	0.111	0.429	-	SLC39A11
rs742605	0.111	0.436	-	*TRIB3*
rs5771716	0.389	0.724	-	FAM19A5
LL cases vs. LL cases
rs11684785	0.094	-^b	0.423	TMEM163
rs10498105	0.306	-	0.686	*EPHA4*
rs2398966	0.111	-	0.413	*AC012154.16*
rs7664880	0.361	-	0.684	*AC096566.2*
rs173948	0.222	-	0.548	TRIO
rs42404	0.083	-	0.386	TRIO
rs890937	0.083	-	0.377	TRIO
rs358753	0.111	-	0.421	TRIO
rs27761	0.139	-	0.452	TRIO
rs27114	0.111	-	0.442	TRIO
rs40066	0.389	-	0.707	FBXL17
rs40065	0.389	-	0.707	FBXL17
rs7447161	0.083	-	0.376	*FER*
rs921634	0.028	-	0.299	PKD1L1
rs1324208	0.389	-	0.719	SMARCA2
rs1396553	0.417	-	0.747	SMC3
rs2793471	0.222	-	0.584	*AL135933.11*
rs6539845	0.139	-	0.452	SLC6A15
rs11116408	0.139	-	0.457	SLC6A15
rs2611279	0.111	-	0.446	*SLC6A15*
rs7967594	0.111	-	0.447	*SLC6A15*
rs1380412	0.111	-	0.438	SLC6A15
rs742605	0.111	-	0.419	*TRIB3*

ISSN: 1753-6561