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Table 1 Extrapolation, prediction and estimation methods

From: Comparison of analyses of the QTLMAS XIII common dataset. I: genomic selection

   

Step 1

Step 2

 

Method

Paper

Model

Extrapolation

Prediction

 

1

Cleveland

Bayes-A

Gompertz

Bayes-A

 

2

Cleveland

Lasso

Gompertz

Bayes-Lasso

 

3

Cleveland

Student- t

Gompertz

Bayes-Student-t

 

4

Pong-Wong

GEBV2

Gompertz

Bayes-B

 

5

Schulz-Streeck

Ridge

Logistic

BLUP \ RR

 
   

Step 1

Step 2

 

Method

Paper

Model

Prediction

Extrapolation

 

6

Mucha

SNPL

GRM

quadratic 5 points

 

7

Veerkamp

14.SNP

Bayes-C

linear 3 points

 

8

Veerkamp

BLUP

A matrix

linear 3 points

 

9

Veerkamp

IBD

Bayes-C

linear 3 points

 

10

Veerkamp

IBS2

Bayes-C

linear 3 points

 

11

Veerkamp

IBS5

Bayes-C

linear 3 points

 

12

Veerkamp

SNP1

Bayes-A

linear 3 points

 

13

Veerkamp

SNP2

Bayes-C

linear 3 points

 

14

Veerkamp

SNP3

Bayes-C (3dist)

linear 3 points

 

15

Verbyla

Bayes.BLUP

Bayes

linear 3 points

 

16

Verbyla

BayesA

Bayes-A

linear 3 points

 

17

Verbyla

BayesA.B

Bayes

linear 3 points

 

18

Verbyla

BayesC

Bayes-C

linear 3 points

 
  

Step 1

Step 2

Step 3

 

Method

Paper

Model

Estimation

Prediction

Extrapolation

19

Pong-Wong

GEBV1

Gompertz

Bayes-B

Gompertz

20

QTLMAS

Best case

Logistic

Regression

Logistic