Table 2 Loci associated with latent variables: asymptote (ASYM), inflection point (XMID) and scaling factor (SCAL) using haplotypes consisting of 1 and 2 SNPs.
From: Bayesian multi-QTL mapping for growth curve parameters
latent variable | SNPs/haplotype | Locus | pwBF | Prob(2ndMix) | FDR |
|---|---|---|---|---|---|
ASYM | 1SNP | all_0.4447 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_1.0359 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_1.0516 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_1.8834 | 103.7 | 0.98 | 0.01 |
| Â | Â | all_3.7168 | 24.2 | 0.91 | 0.02 |
| Â | 2 SNPs | all_0.4447+1 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_1.0243+1 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_1.8574+1 | 44.3 | 0.95 | 0.02 |
| Â | Â | all_1.0516+ | 9.3 | 0.80 | 0.06 |
| Â | Â | all_3.7168+1 | 1.3 | 0.36 | 0.18 |
XMID | 1 SNP | all_0.4153 | 231.0 | 1.00 | 0.00 |
| Â | 2 SNPs | all_0.4029+1 | 23.6 | 0.91 | 0.09 |
SCAL | 1SNP | all_1.4852 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_0.9137 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_3.0827 | 71.5 | 0.97 | 0.01 |
| Â | Â | all_3.0411 | 67.1 | 0.97 | 0.02 |
| Â | Â | all_3.8701 | 48.4 | 0.95 | 0.02 |
| Â | Â | all_2.3108 | 6.1 | 0.72 | 0.06 |
| Â | Â | all_4.3212 | 3.3 | 0.59 | 0.11 |
| Â | Â | all_3.9476 | 1.7 | 0.42 | 0.17 |
| Â | Â | all_4.3915 | 1.2 | 0.33 | 0.23 |
| Â | 2 SNPs | all_0.9137+1 | 231.0 | 1.00 | 0.00 |
| Â | Â | all_2.3108+1 | 21.0 | 0.90 | 0.05 |
| Â | Â | all_1.4829+1 | 18.9 | 0.89 | 0.07 |
| Â | Â | all_3.8701 + 1 | 12.2 | 0.84 | 0.09 |
| Â | Â | all_3.0480+1 | 3.8 | 0.62 | 0.15 |
| Â | Â | all_0.4447+1 | 3.8 | 0.62 | 0.19 |
| Â | Â | all_3.0813+1 | 2.9 | 0.55 | 0.23 |
| Â | Â | all_4.2975+1 | 2.5 | 0.52 | 0.26 |
| Â | Â | all_3.0128+1 | 1.5 | 0.39 | 0.30 |
| Â | Â | all_3.8360+1 | 1.1 | 0.33 | 0.33 |
| Â | Â | all_3.1467+1 | 1.0 | 0.31 | 0.37 |
| Â | Â | all_ 2.4607+1 | 1.0 | 0.31 | 0.39 |