Table 1 Results from SNP discovery in 41 candidate genes.
Predicted gene region | SNP frequency parameters | SNP classification | Â | ||||
|---|---|---|---|---|---|---|---|
| Â | SNP count (range) | SNP Frequency in bases/SNP (range) | Total length in bp (range) | Ts | Tv | Total | Ratio(Ts/Tv) |
5'UTR(n=1) | 4 | 40.8 | 163 | 1 | 3 | 4 | 0.33 |
Exons(n=176) | 427 (1-52) | 105.8 (0-1339) | 45,177 (200-3487) | 310 | 117 | 427 | 2.65 |
Introns(n=136) | 536 (0-64) | 71.3 (0-472) | 38,210 (68-5079) | 332 | 204 | 536 | 1.63 |
3'UTR(n=27) | 54 (0-11) | 81.6 (0-358) | 4,405 (7-674) | 33 | 21 | 54 | 1.57 |
Unclassified(n=13) | 69 (0-25) | 62.7 (0-425) | 4,329 (4-425) | 40 | 29 | 69 | 1.38 |
Nongenic(n=17) | 101 (0-25) | 82.6 (0-974) | 8,340 (6-1481) | 63 | 38 | 101 | 1.66 |
Total(n=370) | 1,191 (1-115) | 84.5 (38.2-974) | 100,624 (634-9864) | 779 | 412 | 1191 | 1.89 |