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Table 2 True discoveries in at least eight replicates with optimal cluster numbers

From: Detection of associations with rare and common SNPs for quantitative traits: a nonparametric Bayes-based approach

Gene

SNP

MAF

β

F = 10, TP = 10, FP = 2, FDP = 17%

ARNT

C1S6561

0.000717

0.65721

KDR

C4S1877

0.000717

1.07706

KDR

C4S1879

0.000717

0.61830

KDR

C4S1889

0.000717

0.94133

VEGFC

C4S4935

0.000717

1.35726

VEGFA

C6S2981

0.002152

1.20645

FLT1

C13S431

0.017217

0.74136

FLT1

C13S522

0.027977

0.61830

FLT1

C13S523

0.066714

0.64997

FLT1

C13S524

0.004304

0.62223

F = 9, TP = 15, FP = 2, FDP = 12%

ELAVL4

C1S3181

0.000717

0.76911

ELAVL4

C1S3182

0.000717

0.30432

ARNT

C1S6533

0.011478

0.56190

FLT1

C13S399

0.000717

0.39602

FLT1

C13S479

0.000717

0.75946

F = 8, TP = 19, FP = 4, FDP = 17%

KDR

C4S1873

0.000717

0.58301

KDR

C4S1884

0.020803

0.29558

FLT4

C5S5156

0.000717

0.43010

FLT1

C13S505

0.000717

0.44850

  1. The items in the bolded rows are the frequency of detection over the 10 replicates (F), the number of true positives (TP), the number of false positives (FP), and the proportion of false discovery (FDP) in each case.
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BMC Proceedings

ISSN: 1753-6561

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