From: Family- and population-based designs identify different rare causal variants
Gene | SNP with highest β | SNP with highest MAF | Number of simulation | |||||
---|---|---|---|---|---|---|---|---|
SNP | β | SNP | MAF | LOD ≥ 1 (α = 10−2) | LOD ≥ 2 (α = 10−3) | LOD ≥ 3 (α = 10−4) | LOD ≥ 4 (α = 10−5) | |
ARNT | C1S6561 | 0.65721 | C1S6533 | 0.011478 | 1 | 0 | 0 | 0 |
ELAVL4 | C1S3181 | 0.76911 | C1S3181 | 0.000717 | 3 | 0 | 0 | 0 |
C1S3182 | 0.000717 | |||||||
FLT1 | C13S479 | 0.75946 | C13S523 | 0.066714 | 4 | 0 | 0 | 0 |
FLT4 | C5S5156 | 0.43010 | C5S5133 | 0.001435 | 10 | 1 | 0 | 0 |
HIF1A | C14S1729 | 0.28532 | C14S1734 | 0.012195 | 1 | 0 | 0 | 0 |
HIF3A | C19S4831 | 0.29287 | C19S4799 | 0.000717 | 43 | 3 | 0 | 0 |
C19S4815 | 0.000717 | |||||||
C19S4831 | 0.000717 | |||||||
KDR | C4S1877 | 1.07706 | C4S1878 | 0.164993 | 48 | 9 | 0 | 0 |
VEGFA | C6S2981 | 1.20645 | C6S2981 | 0.002152 | 198 | 172 | 110 | 55 |
VEGFC | C4S4935 | 1.35726 | C4S4935 | 0.000717 | 197 | 167 | 126 | 76 |