Table 1 Selected SNPs based on p-values of statistic T (p < 5 × 10−4)
From: Treating phenotype as given: a simple resampling method for genome-wide association studies
| Â | Â | Â | Â | Â | p-value | |
|---|---|---|---|---|---|---|
Chromosome | Gene | SNP | Minor allele frequency | Base-pair position | Statistic T | Statistic S |
1 | NEK7 | C1S8842 | 0.001435 | 196488886 | 3.55 × 10−4 | 1.53 × 10−1 |
2 | R3HDM1 | C2S3088 | 0.002152 | 136095600 | 1.32 × 10−4 | 1.18 × 10−1 |
6 | BAT2 | C6S2242 | 0.008608 | 31712334 | 4.78 × 10−4 | 5.59 × 10−2 |
7 | MLXIPL | C7S1785 | 0.017217 | 72658237 | 3.43 × 10−4 | 1.59 × 10−2 |
8 | NRG1 | C8S1224 | 0.001435 | 32625157 | 4.28 × 10−4 | 1.56 × 10−1 |
|  | RBM13 | C8S1319 | 0.005022 | 33475616 | 1.67 × 10−4 | 4.63 × 10−2 |
|  | ANK1 | C8S1496 | 0.005022 | 41638505 | 2.92 × 10−5 | 6.35 × 10−2 |
|  | CA3 | C8S2634 | 0.029412 | 86539249 | 1.55 × 10−5 | 5.59 × 10−3 |
|  | CNGB3 | C8S2646 | 0.105452 | 87748419 | 6.52 × 10−5 | 5.72 × 10−4 |
|  | NBN | C8S2710 | 0.022238 | 91064195 | 3.58 × 10−5 | 8.67 × 10−3 |
|  | LPL | C8S442 | 0.015782 | 19849988 | 1.54 × 10−7 | 1.30 × 10−2 |
10 | DUSP5 | C10S5537 | 0.133429 | 112256813 | 4.77 × 10−4 | 7.31 × 10−4 |
11 | PDGFD | C11S5292 | 0.008608 | 103413068 | 1.21 × 10−5 | 3.89 × 10−2 |
12 | SLCO1A2 | C12S1083 | 0.001435 | 21319511 | 4.28 × 10−4 | 1.56 × 10−1 |
|  | LRRK2 | C12S1884 | 0.023673 | 38978429 | 4.72 × 10−4 | 2.24 × 10−2 |
19 | C19ORF6 | C19S56 | 0.018651 | 963559 | 2.04 × 10−4 | 1.96 × 10−2 |
|  | CAPNS1 | C19S3468 | 0.012912 | 41325704 | 4.69 × 10−4 | 3.69 × 10−2 |
|  | PSG9 | C19S4603 | 0.030129 | 48465412 | 3.10 × 10−4 | 7.17 × 10−3 |
20 | PRIC285 | C20S2223 | 0.003587 | 61666107 | 2.59 × 10−5 | 6.27 × 10−2 |