Table 2 Selected SNPs based on resampling p-values of statistic S (p < 5 × 10−4)
From: Treating phenotype as given: a simple resampling method for genome-wide association studies
| Â | Â | Â | Â | Â | p-value | |
|---|---|---|---|---|---|---|
Chromosome | Gene | SNP | Minor allele frequency | Base-pair position | Statistic T | Statistic S |
1 | LOC100133124 | C1S2906 | 0.32 | 46294146 | 3.99 × 10−3 | 3.70 × 10−4 |
2 | LY75 | C2S4258 | 0.45 | 160419168 | 1.25 × 10−2 | 3.31 × 10−4 |
6 | HLA-A | C6S1568 | 0.30 | 30020831 | 8.07 × 10−3 | 1.21 × 10−4 |
11 | OR52H1 | C11S662 | 0.31 | 5522627 | 1.31 × 10−3 | 7.35 × 10−5 |
|  |  | C11S665 | 0.32 | 5522688 | 3.15 × 10−3 | 1.52 × 10−4 |
|  |  | C11S675 | 0.32 | 5523065 | 1.59 × 10−3 | 8.52 × 10−5 |
|  | GALNTL4 | C11S1338 | 0.43 | 11310922 | 3.25 × 10−3 | 2.04 × 10−4 |
|  | SYTL2 | C11S4881 | 0.38 | 85113378 | 2.36 × 10−3 | 1.87 × 10−4 |
|  |  | C11S4893 | 0.31 | 85114042 | 5.41 × 10−3 | 3.70 × 10−4 |
|  |  | C11S4949 | 0.48 | 85134351 | 6.79 × 10−3 | 2.66 × 10−4 |
|  | LOC100128794 | C11S5677 | 0.30 | 107889417 | 8.72 × 10−3 | 4.65 × 10−4 |
12 | OR6C76 | C12S3054 | 0.26 | 54106388 | 4.77 × 10−3 | 4.37 × 10−4 |
17 | RHOT1 | C17S1743 | 0.35 | 27558083 | 6.77 × 10−3 | 2.81 × 10−4 |
|  | SLFN13 | C17S1964 | 0.42 | 30792467 | 9.33 × 10−3 | 2.33 × 10−4 |
|  | PIP4K2B | C17S2376 | 0.40 | 34180257 | 7.62 × 10−3 | 3.55 × 10−4 |
|  | CDC27 | C17S3299 | 0.46 | 42589359 | 2.68 × 10−3 | 2.58 × 10−4 |
19 | PSG3 | C19S4193 | 0.34 | 47935058 | 1.73 × 10−2 | 4.00 × 10−4 |
20 | PRIC285 | C20S2305 | 0.22 | 61671020 | 5.23 × 10−3 | 3.72 × 10−4 |