Table 2 Pathway size and number of true genes or SNPs that each pathway contains
From: A pathway-based association analysis model using common and rare variants
Pathway | Number of genes | Number of true genes | Number of rare SNPs | Number of true rare SNPs | Number of common SNPs picked by LASSO | Number of true common SNPs |
|---|---|---|---|---|---|---|
STEMCELL_EMBRYONIC_UP | 181 | 1 | 1,046 | 3 | 53 | 1 |
LEE_TCELLS2_UP | 169 | 3 | 1,114 | 4 | 51 | 1 |
DAC_PANC_UP | 65 | 2 | 504 | 9 | 39 | 0 |
AGED_RHESUS_UP | 50 | 2 | 392 | 10 | 24 | 3 |
ICHIBA_GVHD | 43 | 3 | 352 | 5 | 18 | 2 |
BRCA_ER_NEG | 152 | 2 | 791 | 4 | 33 | 1 |
HSC_HSC_ADULT | 56 | 2 | 408 | 11 | 27 | 0 |