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Table 1 Top-ranking associations

From: Bayesian hierarchical modeling of means and covariances of gene expression data within families

     Top SNPs used in the prediction
Phenotypea Probe R 2 P(R2 > 0) SNP1 πnm SNP2 πnm SNP3 πnm SNP4 πnm
HSD17B12 217869_at 0.25 0.988 rs1453389b 1.00 rs916482 1.00 rs1425151 0.40 rs509628 0.28
C11orf10 218213_s_at 0.12 0.986 rs916482 1.00       
AMPD3 207992_s_at 0.19 0.985 rs2029463b 0.81 rs948215 0.80 rs1157659 0.21 rs1491846 0.17
FEZ1 203562_at 0.12 0.984 rs2029463 1.00 rs2155076 0.20 rs948215b 0.11   
ADM 202912_at 0.11 0.982 rs916482 1.00       
STIP1 213330_s_at 0.11 0.981 rs916482 0.99 rs1319730 0.33     
DDB1 208619_at 0.15 0.978 rs1530966 0.91 rs597345 0.54 rs1499511 0.10   
FADS1 208964_s_at 0.14 0.974 rs1216592 0.85 rs1605026 0.38 rs591804 0.35   
TPP1 200743_s_at 0.13 0.970 rs916482 0.94 rs1157659 0.14 rs902215b 0.14   
RBM14 204178_s_at 0.10 0.966 rs916482 0.98 rs674237 0.10     
HMBS 203040_s_at 0.13 0.963 rs86392 0.49 rs916482 0.47 rs1319730b 0.44 rs1945906 0.20
PPME1 49077_at 0.11 0.958 rs916482 0.82 rs2155001 0.16     
CD44 204490_s_at 0.12 0.957 rs702738 0.34 rs916482 0.28 rs1319730 0.28 rs1453390b 0.17
NRGN 204081_at 0.10 0.946 rs2029463 0.93 rs961746 0.16 rs509628 0.15   
NDUFS8 203190_at 0.11 0.944 rs86392 0.68 rs1319730 0.33 rs1945906 0.32   
PSMD13 201232_s_at 0.09 0.923 rs916482 0.91 rs1319730 0.12     
  1. aPhenotypes ranked by most significant coefficient of determination, and some of their top associated SNPs ranked by average πnm.
  2. bcis-acting interaction, defined as the SNP being within 10 MB of the phenotype probe alignment.