From: Bayesian hierarchical modeling of means and covariances of gene expression data within families
Top SNPs used in the prediction | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Phenotypea | Probe | R 2 | P(R2 > 0) | SNP1 | πnm | SNP2 | πnm | SNP3 | πnm | SNP4 | πnm |
HSD17B12 | 217869_at | 0.25 | 0.988 | rs1453389b | 1.00 | rs916482 | 1.00 | rs1425151 | 0.40 | rs509628 | 0.28 |
C11orf10 | 218213_s_at | 0.12 | 0.986 | rs916482 | 1.00 | ||||||
AMPD3 | 207992_s_at | 0.19 | 0.985 | rs2029463b | 0.81 | rs948215 | 0.80 | rs1157659 | 0.21 | rs1491846 | 0.17 |
FEZ1 | 203562_at | 0.12 | 0.984 | rs2029463 | 1.00 | rs2155076 | 0.20 | rs948215b | 0.11 | ||
ADM | 202912_at | 0.11 | 0.982 | rs916482 | 1.00 | ||||||
STIP1 | 213330_s_at | 0.11 | 0.981 | rs916482 | 0.99 | rs1319730 | 0.33 | ||||
DDB1 | 208619_at | 0.15 | 0.978 | rs1530966 | 0.91 | rs597345 | 0.54 | rs1499511 | 0.10 | ||
FADS1 | 208964_s_at | 0.14 | 0.974 | rs1216592 | 0.85 | rs1605026 | 0.38 | rs591804 | 0.35 | ||
TPP1 | 200743_s_at | 0.13 | 0.970 | rs916482 | 0.94 | rs1157659 | 0.14 | rs902215b | 0.14 | ||
RBM14 | 204178_s_at | 0.10 | 0.966 | rs916482 | 0.98 | rs674237 | 0.10 | ||||
HMBS | 203040_s_at | 0.13 | 0.963 | rs86392 | 0.49 | rs916482 | 0.47 | rs1319730b | 0.44 | rs1945906 | 0.20 |
PPME1 | 49077_at | 0.11 | 0.958 | rs916482 | 0.82 | rs2155001 | 0.16 | ||||
CD44 | 204490_s_at | 0.12 | 0.957 | rs702738 | 0.34 | rs916482 | 0.28 | rs1319730 | 0.28 | rs1453390b | 0.17 |
NRGN | 204081_at | 0.10 | 0.946 | rs2029463 | 0.93 | rs961746 | 0.16 | rs509628 | 0.15 | ||
NDUFS8 | 203190_at | 0.11 | 0.944 | rs86392 | 0.68 | rs1319730 | 0.33 | rs1945906 | 0.32 | ||
PSMD13 | 201232_s_at | 0.09 | 0.923 | rs916482 | 0.91 | rs1319730 | 0.12 |