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Table 3 Association analysis of NFKB1 using HapMap dataa

From: Analysis of variation in NF-κB genes and expression levels of NF-κB-regulated molecules

Phenotype

SNP

p-Value

Haplotype

p-Value

BCL2A1

rs17032779

0.035

rs17032779-rs230519-rs93059

0.040

CD44

rs230506

0.034

rs230506-rs230505-rs230504

0.009

 

rs3774934

0.034

rs3774933-rs3774934-rs4647972

0.037

CD80

rs4648091

0.025

rs4648090-rs4648091-rs4648095

0.049

 

rs4648134

0.025

rs4648133-rs4648134-rs4648135

0.017

FAS

rs4648134

0.032

---

---

ICAM1

rs4648134

0.032

rs4648133-rs4648134-rs4648135

0.050

IRF1

rs1598859

0.032

rs1610152-rs1598859-rs3774956

0.040

 

rs3774959

0.032

rs3821958-rs1020759-rs3774959

0.040

VCAM1

rs7679591

0.011

rs230528-rs7679591-rs230526

0.040

 

rs17032779

0.014

rs230521-rs230520-rs17032779

0.047

 

rs4648018

0.014

rs4648016-rs4648018-rs230500

0.046

 

rs4648069

0.014

rs4648055-rs4648068-rs4608069

0.049

 

rs4648091

0.014

rs4648090-rs4648091-rs4648095

0.010

 

rs4648134

0.014

rs4648133-rs4648134-rs4648135

0.050

 

rs10489114

0.014

rs3774959-rs10489114-rs7377680

0.034

 

rs4648015

0.014

rs230496-rs4648015-rs230498

0.041

 

rs4648016

0.014

rs230498-rs4648016-rs4648018

0.046

 

rs4648043

0.014

rs3774956-rs4648043-rs3821958

0.037

  1. aFamily-based association tests suggested SNP rs4648136 and haplotype rs4648134-rs4648135-rs4648136 associated with CD80, FAS and ICAM1 phenotypes.