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Table 4 Logistic regression deviance table and likelihood ratio test results on data shown in Table 3

From: Constructing gene association networks for rheumatoid arthritis using the backward genotype-trait association (BGTA) algorithm

Modela df Deviance Residual df Residual deviance p-Value from LR test
Null model    1670 2316.23  
SLC22A4 2 0.24 1668 2315.99 0.89
SUMO4 2 14.60 1666 2301.39 0.0007 b
CARD15 1 0.08 1665 2301.31 0.78
SLC22A4 × SUMO4 4 10.40 1661 2290.92 0.03
SLC22A4 × CARD15 1 0.32 1660 2290.60 0.57
SUMO4 × CARD15 2 1.92 1658 2288.68 0.38
SLC22A4 × SUMO4 × CARD15 2 17.13 1656 2271.54 0.0002
  1. aSNPs analyzed: rs2073838 (SLC22A4), rs577001 (SUMO4), HugotSNP12ms3 (CARD15)
  2. bBold indicates significant p-values.