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Table 4 Logistic regression deviance table and likelihood ratio test results on data shown in Table 3

From: Constructing gene association networks for rheumatoid arthritis using the backward genotype-trait association (BGTA) algorithm

Modela

df

Deviance

Residual df

Residual deviance

p-Value from LR test

Null model

  

1670

2316.23

 

SLC22A4

2

0.24

1668

2315.99

0.89

SUMO4

2

14.60

1666

2301.39

0.0007 b

CARD15

1

0.08

1665

2301.31

0.78

SLC22A4 × SUMO4

4

10.40

1661

2290.92

0.03

SLC22A4 × CARD15

1

0.32

1660

2290.60

0.57

SUMO4 × CARD15

2

1.92

1658

2288.68

0.38

SLC22A4 × SUMO4 × CARD15

2

17.13

1656

2271.54

0.0002

  1. aSNPs analyzed: rs2073838 (SLC22A4), rs577001 (SUMO4), HugotSNP12ms3 (CARD15)
  2. bBold indicates significant p-values.