| |
p-Value (relative rank)
|
|---|
|
SNP index
|
185
|
186
|
191
|
192
|
|---|
|
CMMT
|
4.0 × 10-2 (457)
|
8.3 × 10-5 (1)
|
1.2 × 10-1 (1257)
|
2.6 × 10-3 (43)
|
|
FBAT
|
9.9 × 10-5 (2)
|
2.4 × 10-3 (30)
|
4.4 × 10-4 (5)
|
5.4 × 10-3 (57)
|
|
2-stagea
|
1.0
|
2.4 × 10-3 (1)
|
1.0
|
1.0
|
|
1-stage CSST
|
6.2 × 10-5 (3)
|
4.3 × 10-6 (1)
|
6.1 × 10-4 (16)
|
2.2 × 10-4 (7)
|
|
1-stage CLRT
|
8.0 × 10-5 (3)
|
7.7 × 10-6 (1)
|
6.9 × 10-4 (13)
|
3.0 × 10-4 (5)
|
- aIf a SNP is not among the top ten SNPs from the CMMT stage, it is not considered in the second stage, so the two-stage method p-value is listed as 1.0, the only p-value for which the null hypothesis will never be rejected, regardless of α.
