Two-step intermediate fine mapping with likelihood ratio test statistics: applications to Problems 2 and 3 data of GAW15

Table 1 Root mean squared errors of the estimates of the disease location, z₀, z₁, and z₂

No. ASPs	Strategy	With parental genotypes				Without parental genotypes
		Location (cM)	z₀	z₁	z₂	Location (cM)	z₀	z₁	z₂
	MS1	4.9	0.020	0.033	0.035	5.6	0.023	0.035	0.034
250	MSINT	3.8	0.020	0.033	0.033	4.8	0.024	0.041	0.040
	SNP1	2.4	0.018	0.031	0.033	4.7	0.028	0.041	0.036
	MS1	3.7	0.016	0.026	0.027	4.0	0.017	0.027	0.025
500	MSINT	1.9	0.016	0.026	0.024	2.3	0.017	0.037	0.035
	SNP1	1.3	0.014	0.025	0.023	3.4	0.020	0.038	0.028
	MS1	3.6	0.015	0.021	0.023	3.6	0.014	0.024	0.021
750	MSINT	1.5	0.013	0.022	0.020	1.8	0.015	0.034	0.033
	SNP1	1.3	0.012	0.020	0.019	2.9	0.019	0.036	0.026

ISSN: 1753-6561