Table 1 Number of detected traits (having at least one linkage signal) and mean number of linkage signals per trait
From: Impact of gene expression data pre-processing on expression quantitative trait locus mapping
No. Traits detected (%) | Mean no. of linkage signals by detected trait (range) | |||||
|---|---|---|---|---|---|---|
Set of traits | MAS5 | GCRMA | RMA | MAS5 | GCRMA | RMA |
350 random | 37/350 (11%) | 45/350 (13%) | 36/350 (10%) | 1.43 (1–4) | 4.08 (1–61) | 1.30 (1–3) |
100 most variable | 18/100 (18%) | 21/100 (21%) | 17/100 (17%) | 1.55 (1–4) | 1.85 (1–5) | 1.82 (1–7) |
100 most heritable | 39/100 (39%) | 36/100 (36%) | 34/100 (34%) | 6.97 (1–90) | 7.8 (1–111) | 4.35 (1–54) |
100 non-expressed | 2/100 (2%) | 14/100 (14%) | 7/100 (7%) | 1 (1-1) | 6.5 (1–30) | 3.6 (1–9) |