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Table 2 Summary of false-positive cis/trans linkage results (N, number of QTLs)

From: Effects on linkage analyses of different Affymetrix expression measures as quantitative trait phenotypes

  

LOD ≥ 2

LOD ≥ 3

LOD ≥ 4

LOD ≥ 5

LOD ≥ 6

Set

Mean LOD (max)

cis

trans

cis

trans

trans

trans

trans

REFQT

3.44 (5.91)

1

196(52)

 

44 (16)

2(2)

2 (2)

 

MAS5QP

3.74 (7.18)

3(2)

551(57)

1

215 (26)

110(3)

41 (2)

7(1)

RMAQP

3.46 (5.33)

1

223(59)

 

34 (20)

4(3)

1

 

GCRMAQP

3.45 (5.36)

1

183(54)

 

27 (13)

5(5)

1

 

DCHIPMMQP

3.51 (5.17)

 

214(53)

 

52 (17)

11(5)

1

 

DCHIPPMQP

3.55 (5.89)

 

302(51)

 

96 (17)

17(3)

6 (1)