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Figure 1 | BMC Proceedings

Figure 1

From: Modeling linkage disequilibrium in exact linkage computations: a comparison of first-order Markov approaches and the clustered-markers approach

Figure 1

Assessment of LD between markers. r2 was estimated for adjacent markers, every second marker, every third marker, and every tenth marker (denoted by respectively, Δ = 1, Δ = 2, Δ = 3, and Δ = 10). The left panel shows histogram of r2 over marker pairs for different Δ, the middle panel shows mean value of r2 as a function of Δ, and the right panel shows scatter plot of r2 as modeled by the FOMM vs. r2 as estimated from the data for Δ = 2.

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