Modeling linkage disequilibrium in exact linkage computations: a comparison of first-order Markov approaches and the clustered-markers approach

Table 1 Comparison using all SNPs of chromosomes 1, 2, 3, 4, and 6

		Absolute difference with respect to Bayesian
	Mean difference with respect to Bayesian	Mean	Maximum	Max Z_pairs
Bayesian 1^st order Markov	NA	NA	NA	1.657
ML 1^st order Markov	0.027	0.029	0.115	1.691
Clustered markers r² < 0.10	0.067	0.093	0.914	1.724
Clustered markers r² < 0.05	-0.118	0.231	1.498	1.424
Ind. SNPs r² < 0.10	0.118	0.135	0.4963	1.816
Ignore LD	0.169	0.173	0.659	1.894

ISSN: 1753-6561