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Table 2 Maximum TLOD and HLOD scores

From: Analysis of high-density single-nucleotide polymorphism data: three novel methods that control for linkage disequilibrium between markers in a linkage analysis

 

Chromosome 6

Chromosome 21

 

MCLINK

Merlin

MCLINK

Merlin

 

Maximum TLOD

position

Maximum HLOD

position

Maximum TLOD

position

Maximum HLOD

position

Complete SNP set

16.95

28.96

16.40

28.96

11.75

37.44

11.31

37.46

PCA-Haplotype

16.07

28.96

15.61

28.96

1.09

37.38

1.30

37.38

PCA-Genotype

11.52

28.96

11.35

28.96

0.98

36.01

1.25

36.01

SNPLINK

14.65

28.96

14.18

33.0

0.83

37.38

0.98

36.01

 

Maximum TLOD

position

Maximum TLOD

position

McLink-LD

9.07

38.61

1.17

38.16

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BMC Proceedings

ISSN: 1753-6561

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