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Figure 2 | BMC Proceedings

Figure 2

From: Handling linkage disequilibrium in linkage analysis using dense single-nucleotide polymorphisms

Figure 2

ASP analysis: average maximum LOD score and average number of markers* ( r2). Summary results from all 100 replicates with families without parental genotypes (except for the last panel, which shows the results from the complete data with full parental genotypes). Maximum LOD scores are shown in box plots with five panels: A, unadjusted, data with missing parental genotypes (pink); B, simple algorithm, with four r2 thresholds (blue); C, SNPLINK, with four r2 thresholds (green); D, MERLIN LD, with four r2 thresholds (purple); and E, complete data unadjusted (red).

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