Skip to main content

Table 1 Ranks of candidate genes among 9187 SNPs across 22 chromosomes based on five ranking methods, sorted by chromosome and location

From: Robust ranks of true associations in genome-wide case-control association studies

   

Rank

Chr

Location (bp)

Diffa

Z 0

Z 1/2

Z 1

min p

MERT

6

32447149

37 kb

4

4

4

3

4

6

32499465

14 kb

2

2

2

1

2

6

32521277

36 kb

3

3

3

2

3

6

32772203

387 kb

5

5

5

4

5

6

36900959

330 kb

966

1190

2028

1881

647

6

37363880

130 kb

8172

6

6

6

10

6

37539191

300 kb

6359

1430

464

931

2897

6

37657759

423 kb

968

1341

4671

1884

1414

8

140606402

3.2 mb

3012

4237

5775

5167

3328

8

140676097

3.1 mb

8391

7443

7097

8726

7382

8

140679773

3.1 mb

7936

7288

7096

8727

7225

8

142073109

1.7 mb

8918

6991

6588

8459

7407

9

25996861

262 kb

2921

4074

6290

5039

3556

9

26089466

169 kb

2179

9009

4702

3930

6948

9

26484252

225 kb

2374

2254

4205

3889

2291

9

26521692

262 kb

2909

2113

2819

3677

1947

9

27418665

118 kb

3667

3963

6458

5915

4070

9

27505967

31 kb

6228

7286

8222

8279

7989

9

27697461

160 kb

5582

7177

5317

7490

8915

9

27697600

160 kb

5195

4841

3323

5329

7532

11

110204257

30 kb

1

1

1

5

1

11

110259778

24 kb

3492

3162

4276

5125

2930

11

110264385

29 kb

271

222

857

419

186

11

110322303

87 kb

6840

3492

1930

3411

3030

16

12527182

9 kb

7729

4194

4148

6328

4884

16

12577812

60 kb

4288

5913

4696

6589

8924

16

12618035

100 kb

6212

7783

8356

8266

6771

16

12783679

266 kb

5824

4802

5334

7101

4733

18

65844474

225 kb

6522

4959

5282

7254

4864

18

66045171

24 kb

7063

8720

9182

8750

7913

18

66048927

20 kb

15

15

15

15

13

18

66230498

160 kb

5441

6135

6872

7732

5409

  1. aDiff is the distance to the closest candidate gene