Table 2 Average ranks of nine SNPs with true association in ten replicates in a genome-wide association study with 100 K SNPs
From: Robust ranks of true associations in genome-wide case-control association studies
| Â | Â | Â | Rank | ||||
|---|---|---|---|---|---|---|---|
Model | SNPs | λ 2 | Z 0 | Z 1/2 | Z 1 | min p | MERT |
Recessive | 1 | 1.5 | 17582.8 | 15273.2 | 33593.4 | 16675.5 | 14511.4 |
Recessive | 2 | 2.0 | 645.5 | 2591.3 | 21714.1 | 1331.2 | 1476.4 |
Recessive | 3 | 2.5 | 1.5 | 385.9 | 19531.0 | 4.2 | 82.6 |
Additive | 4 | 1.5 | 10106.3 | 5501.4 | 12420.2 | 6265.1 | 4808.4 |
Additive | 5 | 2.0 | 5054.7 | 49.9 | 65.7 | 91.0 | 78.9 |
Additive | 6 | 2.5 | 440.6 | 2.6 | 3.5 | 3.3 | 2.5 |
Dominant | 7 | 1.5 | 30772.7 | 3510.1 | 3118.1 | 4245.9 | 4980.7 |
Dominant | 8 | 2.0 | 11644.0 | 6.8 | 3.1 | 4.1 | 19.0 |
Dominant | 9 | 2.5 | 6364.8 | 1.3 | 1.0 | 1.2 | 1.8 |