Table 2 Significantly associated SNPs after Bonferroni correction with αgenome = 0.05 using LAMP
From: Genome-wide linkage and association analysis of rheumatoid arthritis in a Canadian population
Chr | SNP | Position (bp) | MAF | LRT | p-Value |
|---|---|---|---|---|---|
1 | rs12564931 | 83,251,950 | 0.3028 | 30.49 | 2.39 × 10-7 |
2 | SNP_A-1732798 | 142,778,205 | 0.0784 | 36.24 | 1.35 × 10-8 |
4 | rs4834009 | 126,300,977 | 0.1523 | 35.00 | 2.51 × 10-8 |
4 | rs10517834 | 166,748,108 | 0.3014 | 34.77 | 2.82 × 10-8 |
5 | rs10520893 | 23,724,883 | 0.0839 | 34.49 | 3.24 × 10-8 |
7 | rs6593179 | 54,518,391 | 0.2803 | 29.98 | 3.09 × 10-7 |
9 | rs680471 | 32,506,949 | 0.2953 | 33.43 | 5.05 × 10-8 |
9 | rs4111290 | 66,457,420 | 0.2821 | 30.16 | 2.82 × 10-7 |
10 | rs10509272 | 67,769,079 | 0.2739 | 29.75 | 3.47 × 10-7 |
13 | rs10492477 | 65,139,738 | 0.1029 | 48.26 | 3.31 × 10-11 |
15 | rs2090622 | 19,204,681 | 0.3038 | 35.69 | 1.78 × 10-8 |
15 | rs10519774 | 31,024,477 | 0.2566 | 29.79 | 3.40 × 10-7 |
18 | rs1115947 | 62,064,985 | 0.2853 | 32.00 | 1.13 × 10-7 |