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Table 2 FBAT results for SNPs outside the HLA region

From: Empirically derived subgroups in rheumatoid arthritis: association with single-nucleotide polymorphisms on chromosome 6

SNP

Gene

Location

Informative families

Z

p-Valuea

Cluster

rs6597161

FARS2

6p25.1

157

2.58

0.0098

3

rs1953088

PHACTR1

6p24.1

102

3.91

0.0001

5

rs7775474

 

6p23

107

2.69

0.0071

5

rs1938115

 

6q12

136

2.85

0.0043

3

rs2796051

KCNQ5

6q14

16

2.95

0.0032

5

rs6907703

 

6q14

105

2.84

0.0046

4

rs1548297

EPHA7

6q16.1

127

2.73

0.0063

4

rs1158747

LAMA4

6q21

144

2.64

0.0084

3

rs2030926

 

6q22

156

3.26

0.0011

3

rs1012509

MAN1A1

6q22

95

2.79

0.0053

5

rs577876

PARK2

6q25.2

134

3.77

0.0002

3

rs880900

RPS6KA2

6q27

86

2.64

0.0084

5

rs6917113

 

6q27

72

3.00

0.0027

5

  1. aValues less than 0.01 are shown.