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Figure 1 | BMC Proceedings

Figure 1

From: Application of sequential haplotype scan methods to case-control data

Figure 1

Results for the PTPN22 data. The triangle indicates the physical position of the G620W variant, which was assumed not measured in our analysis. The p-values of χ S 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaiiGacqWFhpWydaqhaaWcbaGaem4uamfabaGaeGOmaidaaaaa@30B8@ (x) and χ H 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaiiGacqWFhpWydaqhaaWcbaGaemisaGeabaGaeGOmaidaaaaa@30A2@ (x) are truncated at the seventh SNP because their permutated p-values are zero based on one million permutations.

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