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Table 1 Power to identify the true susceptibility loci using different methods to infer phases

From: Dealing with missing phase and missing data in phylogeny-based analysis

  % Power (95% confidence interval)
Method Phaseda Most likely haplotypesb Imputationc
2 sites 81 (73.3–88.7) 84 (76.8–91.2) 78 (69.9–86.1)
1 site onlyd 12 (5.6–18.4) 8 (2.7–13.3) 13 (6.4–19.6)
1 site + 1 error 7 (2.0–12.0) 8 (2.7–13.3) 9 (3.4–14.6)
  1. a The phase given in the data is used.
  2. b The phase is inferred using ZAPLO (selection of the most likely haplotypes).
  3. c The phase is inferred using ZAPLO and multiple imputation.
  4. d Only one site has a V i > 0 and it is a true DS site.
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