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Table 2 Simulation results

From: The impact of complex informative missingness on the validity of the transmission/disequilibrium test (TDT)

 

Missing patterns

Chromosome 15 (type I error: SNP15_55)

Chromosome 6 (power: SNP6_150)

Model

(Pf11, Pf12, Pf22)(Pm11, Pm12, Pm22)(Po11, Po12, Po22)

TDT

1-TDT

HRR

EM-HRR

TDT

1-TDT

HRR

EM-HRR

1

(0.2,0.2,0.2) (0.2,0.2,0.2) (0.2,0.2,0.2)

5.3

4.8

5.2

4.5

21.5

25.7

22.6

27.9

2

(0.4,0.2,0.2) (0.4,0.2,0.2) (0.1,0.1,0.1)

4.7

16.5

5.8

19.7

21

67.1

22.3

73.9

2

(0.4,0.4,0.2) (0.4,0.4,0.2) (0.1,0.1,0.1)

5.8

14.3

4.4

12

13.8

43.7

11.9

42

2

(0.4,0.3,0.2) (0.4,0.3,0.2) (0.1,0.1,0.1)

5.1

14.4

4.5

16.2

15.9

58

15.7

60.7

2

(0.2,0.2,0.4) (0.2,0.2,0.4) (0.1,0.1,0.1)

4.3

5.1

4.6

6.2

20.1

20.9

21.5

20.7

2

(0.2,0.4,0.4) (0.2,0.4,0.4) (0.1,0.1,0.1)

4.5

6.4

4.1

8.9

15.4

7.7

12.9

5

2

(0.2,0.3,0.4) (0.2,0.3,0.4) (0.1,0.1,0.1)

5.1

6.9

5.3

8.6

17.3

12.6

16.4

10.9

3

(0.4,0.2,0.2) (0.4,0.2,0.2) (0.4,0.2,0.2)

9.5

3.6

10.8

5.5

4.9

21.7

5.5

27.4

3

(0.4,0.4,0.2) (0.4,0.4,0.2) (0.4,0.4,0.2)

9.6

4.2

8.5

4.7

7.9

20.2

7

19.7

3

(0.4,0.3,0.2) (0.4,0.3,0.2) (0.4,0.3,0.2)

8.6

3.4

8.6

4.4

6

18.6

6.1

22.1

3

(0.2,0.2,0.4) (0.2,0.2,0.4) (0.2,0.2,0.4)

10

5.4

11.9

7

34.1

24.8

36.8

29.9

3

(0.2,0.4,0.4) (0.2,0.4,0.4) (0.2,0.4,0.4)

13.5

4.7

12.2

5

41.7

22.2

39.5

23.1

3

(0.2,0.3,0.4) (0.2,0.3,0.4) (0.2,0.3,0.4)

11.5

3.8

11.6

3.6

40.1

23.5

39.7

26.4