Table 2 Two-stage analysis: selected SNPs and their corresponding p-values in the second stage
Chromosome | SNP | Distance (Mb) | Z TDT then Z CC | Z CC then Z TDT | Z TDT or Z CC then Zjoint |
|---|---|---|---|---|---|
6 | SNP6_128 | 7.13 | 1.02 × 10-8 |  | 1.61 × 10-7 |
|  | SNP6_129 | 7.10 | 4.01 × 10-13 |  | 1.45 × 10-8 |
|  | SNP6_130 | 7.10 | 1.48 × 10-13 |  | 1.28 × 10-9 |
|  | SNP6_134 | 6.41 | 5.76 × 10-10 |  | 1.33 × 10-6 |
|  | SNP6_138 b | 3.73 | 2.89 × 10 -15 | 2.85 × 10 -7 | 1.07 × 10 -13 |
|  | SNP6_139 | 3.72 | 2.44 × 10 -15 | 3.75 × 10 -7 | 1.22 × 10 -13 |
|  | SNP6_145 | 2.92 | 1.03 × 10 -9 | 5.20 × 10 -6 | 1.24 × 10 -9 |
|  | SNP6_147 | 2.22 | 1.37 × 10 -8 |  | 3.05 × 10 -7 |
|  | SNP6_150 | 1.39 | 5.99 × 10 -7 |  | 6.25 × 10 -7 |
|  | SNP6_152 c | 0.04 | 2.38 × 10 -221 | 1.55 × 10 -94 | 4.31 × 10 -193 |
|  | SNP6_153 | 0.01 | 0*a | 7.33 × 10 -206 | 0*a |
|  | SNP6_154 | 0.04 | 0* | 1.23 × 10 -182 | 0* |
|  | SNP6_155 | 0.29 | 4.49 × 10 -87 | 1.91 × 10 -49 | 7.36 × 10 -86 |
|  | SNP6_160 | 0.65 | 8.62 × 19 -10 | 8.20 × 10 -9 | 1.16 × 10 -11 |
|  | SNP6_162 | 0.13 | 9.15 × 10 -24 | 1.78 × 10 -15 | 9.36 × 10 -26 |
11 | SNP11_387 | 0.19 |  |  | 3.00 × 10 -6 |
|  | SNP11_389 | 0.03 | 2.78 × 10 -28 | 3.33 × 10 -15 | 2.41 × 10 -27 |
18 | SNP18_269 | 0.02 | 2.25 × 10 -8 |  | 1.56 × 10 -8 |