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Table 2 Haplotype analysis for SNPs in PTPN22

From: Case-control association analysis of rheumatoid arthritis with candidate genes using related cases

SNPs selected in the stepwise regression (SNP2, SNP4, SNP8, SNP11, SNP14) SNPs in LD with SNP9 (SNP3, SNP5, SNP13)
Combinations p-valuesa Combinations p-valuesa
2 & 11 0.008 3 & 5 0.0001
2 & 4 & 11 0.016 3 & 13 0.0001
2 & 8 & 11 0.013 5 & 13 0.009
2 & 11 & 14 0.0003 3 & 5 & 13 0.0002
  1. ap-Values were obtained using all cases and unrelated controls and were not adjusted for the multiple testing.