Case-control association analysis of rheumatoid arthritis with candidate genes using related cases

BMC Proceedings

Table 2 Haplotype analysis for SNPs in PTPN22

SNPs selected in the stepwise regression (SNP2, SNP4, SNP8, SNP11, SNP14)		SNPs in LD with SNP9 (SNP3, SNP5, SNP13)
Combinations	p-values^a	Combinations	p-values^a
2 & 11	0.008	3 & 5	0.0001
2 & 4 & 11	0.016	3 & 13	0.0001
2 & 8 & 11	0.013	5 & 13	0.009
2 & 11 & 14	0.0003	3 & 5 & 13	0.0002

^ap-Values were obtained using all cases and unrelated controls and were not adjusted for the multiple testing.

ISSN: 1753-6561