Table 1 Most associated subsets of one, two and three SNPs
Subset | χ2 df | χ2 value | Corrected p-value | Compared subsets | NCST df | NCST value | NCST p-value |
|---|---|---|---|---|---|---|---|
9 | 2 | 47.6 | 9.5×10-8 | - | - | - | - |
4_9 | 4 | 54.0 | 11.0×10-8 | 4_9 vs. 9 | 2 | 6.4 | 0.041 |
9_10 | 7 | 61.3 | 17.2×10-8 | 9_10 vs. 9 | 5 | 13.7 | 0.017 |
9_11 | 5 | 57.3 | 9.2×10-8 | 9_11 vs. 9 | 3 | 9.7 | 0.021 |
9_10_11 | 12 | 73.0 | 17.8×10-8 | 9_10_11 vs. 9_10 | 5 | 11.7 | 0.038 |