Comparison of GIST and LAMP on the GAW15 simulated data

BMC Proceedings

Table 1 Characteristics of trait loci and surrounding region

	Trait loci			Closest SNP			±5 cM region		Average max NPL (SD) on chromosome
Chr	Locus	cM	Risk allele frequency	Marker	cM	r ²	Number of markers	Maximum r²
A	16	26.29	0.3658	SNP16_31	26.31	0.008	15	0.016	0.60(0.60)
B	8	170.9	0.3992	SNP8_442	167.6	0.002	10	0.006	0.53(0.47)
C	6	49.46	0.8688	SNP6_153	49.46	0.551	48	0.953	62.99(7.76)
D	6	54.57	0.0418	SNP6_162	54.62	0.958	22	0.958	62.99(7.76)
E	18	94.27	0.3797	SNP18_269	94.22	0.145	26	0.145	1.21(0.91)
F	11	115.29	0.6123	SNP11_389	115.28	0.94	41	0.94	0.84(0.63)
G	9	49.40	0.0938	SNP9_185	49.32	0.007	48	0.014	0.56(0.48)
H	9	51.41	0.1663	SNP9_192	51.40	0	45	0.011	0.56(0.48)
Null	7								0.56(0.48)

ISSN: 1753-6561