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Table 1 Characteristics of trait loci and surrounding region

From: Comparison of GIST and LAMP on the GAW15 simulated data

  Trait loci Closest SNP ±5 cM region Average max NPL (SD) on chromosome
Chr Locus cM Risk allele frequency Marker cM r 2 Number of markers Maximum r2  
A 16 26.29 0.3658 SNP16_31 26.31 0.008 15 0.016 0.60(0.60)
B 8 170.9 0.3992 SNP8_442 167.6 0.002 10 0.006 0.53(0.47)
C 6 49.46 0.8688 SNP6_153 49.46 0.551 48 0.953 62.99(7.76)
D 6 54.57 0.0418 SNP6_162 54.62 0.958 22 0.958 62.99(7.76)
E 18 94.27 0.3797 SNP18_269 94.22 0.145 26 0.145 1.21(0.91)
F 11 115.29 0.6123 SNP11_389 115.28 0.94 41 0.94 0.84(0.63)
G 9 49.40 0.0938 SNP9_185 49.32 0.007 48 0.014 0.56(0.48)
H 9 51.41 0.1663 SNP9_192 51.40 0 45 0.011 0.56(0.48)
Null 7         0.56(0.48)