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Table 1 Running time and error rates of fastPHASE on chromosome 6

From: Comparison of haplotyping methods using families and unrelated individuals on simulated rheumatoid arthritis data

    Error rate
Individuals Missing Running time (sec) Genotype inference Heterozygous switch Point-wise
100 0.00 1437 ------a 0.4835 0.1569
100 0.05 1563 0.1106 0.4926 0.1618
100 0.10 1380 0.1202 0.4967 0.1639
100 0.15 1671 0.1267 0.4829 0.1614
200 0.00 4679 ------ 0.4964 0.1609
200 0.05 4620 0.0922 0.4960 0.1620
200 0.10 4673 0.0979 0.4966 0.1635
200 0.15 4382 0.1064 0.4961 0.1631
400 0.00 9417 ------ 0.5035 0.1634
400 0.05 9411 0.0904 0.5093 0.1666
400 0.10 9360 0.0966 0.4880 0.1609
400 0.15 8524 0.1024 0.4959 0.1652
  1. a------, Inference error rate is not measured because no missingness exists in this row.
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BMC Proceedings

ISSN: 1753-6561

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