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Table 1 Running time and error rates of fastPHASE on chromosome 6

From: Comparison of haplotyping methods using families and unrelated individuals on simulated rheumatoid arthritis data

   

Error rate

Individuals

Missing

Running time (sec)

Genotype inference

Heterozygous switch

Point-wise

100

0.00

1437

------a

0.4835

0.1569

100

0.05

1563

0.1106

0.4926

0.1618

100

0.10

1380

0.1202

0.4967

0.1639

100

0.15

1671

0.1267

0.4829

0.1614

200

0.00

4679

------

0.4964

0.1609

200

0.05

4620

0.0922

0.4960

0.1620

200

0.10

4673

0.0979

0.4966

0.1635

200

0.15

4382

0.1064

0.4961

0.1631

400

0.00

9417

------

0.5035

0.1634

400

0.05

9411

0.0904

0.5093

0.1666

400

0.10

9360

0.0966

0.4880

0.1609

400

0.15

8524

0.1024

0.4959

0.1652

  1. a------, Inference error rate is not measured because no missingness exists in this row.