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Table 1 Chromosomal regionsa

From: Comparison of tagging single-nucleotide polymorphism methods in association analyses

Chr (Mb) Size (kb) N SNPsb Mean r2 Protein (Probe set) Original SNPc Cheung et al. [7] p-value Current p-valued
5 (96) 68 72 0.65 LRAP (219759_at) rs2762 2.0 × 10-19 8.0 × 0-11
6 (32) 90 52 0.20 HLA-DRB2 (209480_at) rs6928482 6.5 × 10-11 3.8 × 10-7
20 (33) 49 44 0.58 CPNE1 (206918_s_at) rs6060535 8.4 × 10-13 1.3 × 10-7
20 (36) 25 16 0.73 AA827892 (65588_at) rs788350 3.7 × 10-15 1.6 × 10-5
21 (44) 42 26 0.40 CSTB (201201_at) rs880987 2.5 × 10-12 6.5 × 10-6
  1. aRegions defined as ± 5 kb surrounding original SNP and cis gene.
  2. bBased on MAF > 0.05 in CEU HapMap release 21.
  3. crs Identification number shown is that reported by Cheung et al. based on 57 CEU founders [7].
  4. dCurrent p-value based on 28 CEU founders.