Skip to main content

Table 2 Single-SNP association resultsa

From: Comparison of tagging single-nucleotide polymorphism methods in association analyses

  LRAP HLA-DRB2 CPNE1 AA827892 CSTB
  N b min(p)c N min(p) N min(p) N min(p) N min(p)
All SNPs 72 8.0 × 10 -11 52 3.4 × 10 -11 44 1.3 × 10 -7 16 1.5 × 10 -5 26 6.5 × 10 -6
ldSelect 9 3.6 × 10 -7 28 3.4 × 10 -11 3 1.3 × 10 -7 3 3.7 × 10 -5 9 5.4 × 10 -5
TagSNPs-Rspair 10 1.3 × 10 -7 20 1.8 × 10 -5 3 1.3 × 10 -7 4 1.5 × 10 -5 9 5.4 × 10 -5
TagSNPs-Rspair-trios 10 1.3 × 10 -7 20 1.8 × 10 -5 3 1.3 × 10 -7 4 1.5 × 10 -5 9 6.5 × 10 -6
Tagger-pairwise 9 2.2 × 10 -8 26 1.2 × 10 -8 3 1.2 × 10 -5 3 3.7 × 10 -5 9 4.8 × 10 -5
TagSNPs-Rs 5 1.1 × 10 -8 9 3.4 × 10 -11 2 3.2 × 10-2 3 5.9 × 10-2 4 9.9 × 10 -3
TagSNPs-Rs-trios 5 1.1 × 10 -8 9 1.4 × 10 -5 2 2.9 × 10-2 3 5.9 × 10-2 4 9.9 × 10 -3
Tagger-multimarker 7 3.6 × 10 -7 18 3.4 × 10 -11 3 1.3 × 10 -7 3 3.7 × 10 -5 9 4.8 × 10 -5
TagSNPs-Rh 7 2.8 × 10 -9 9 3.8 × 10 -7 2 1.2 × 10 -5 3 1.5 × 10 -5 4 9.9 × 10 -3
TagSNPs-Rh-trios 6 3.6 × 10 -7 8 5.1 × 10 -5 2 1.2 × 10 -5 3 1.5 × 10 -5 4 1.5 × 10-2
  1. aSubset methods sorted into pairwise, multimarker, and haplotype-based methods.
  2. bN, number of SNPs.
  3. cBold, <0.01.