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Table 3 The overlap of top SNPs using RFs or association test from both data sets

From: Classification of rheumatoid arthritis status with candidate gene and genome-wide single-nucleotide polymorphisms using random forests

 

RFs

Association test

The most significant SNPs from both data sets

Number of common SNPs

p-Values

Number of common SNPs

p-Values

Top 50

0

NA

1

0.357

Top 100

2

0.525

2

0.525

Top 200

12

0.046*

8

0.405

Top 500

49

0.205

48

0.265

Top 1000

191

0.068

191

0.068

Top 2000

679

0.865

720

0.113

Top 3000

1588

0.216

1576

0.413

Top 4000

2820

0.058

2815

0.103