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Table 3 The overlap of top SNPs using RFs or association test from both data sets

From: Classification of rheumatoid arthritis status with candidate gene and genome-wide single-nucleotide polymorphisms using random forests

  RFs Association test
The most significant SNPs from both data sets Number of common SNPs p-Values Number of common SNPs p-Values
Top 50 0 NA 1 0.357
Top 100 2 0.525 2 0.525
Top 200 12 0.046* 8 0.405
Top 500 49 0.205 48 0.265
Top 1000 191 0.068 191 0.068
Top 2000 679 0.865 720 0.113
Top 3000 1588 0.216 1576 0.413
Top 4000 2820 0.058 2815 0.103