|  | Cis-Association analysis (Step 1) | Linkage analysis of residuals (Step 2) – Signals at cis-SNPs | Association analysis under linkage peaks (Step 3) | |||
---|---|---|---|---|---|---|---|
Gene Symbol | Location | p-value for cis-SNP with peak LOD score | Variation explained (R2%) | cis-SNP with peak LOD score | Peak (cis) LOD score | (R2%) | No. of SNPs in model |
PARP4a | 13q11 | 0.023 | 3.3 | rs735770 | 6.21 | 80.2 | 4 |
VAMP8b | 2p12-p11.2 | 0.003 | 1.2 | rs1432265 | 7.8 | 99.9 | 3 |
ITGB1BP1 | 2p25.2 | 0.051 | 2.4 | rs1003653 | 10.56 | 55.3 | 5 |
TPP2 | 13q32-q33 | 0.693 | 0.2 | rs1412953 | 6.01 | 99.3 | 3 |
GSTM2b | 1p13.3 | 0.001 | 8.9 | rs559479 | 9.22 | 86.8 | 4 |
GSTM1a, b | 1p13.3 | 0.024 | 7.1 | rs15864 | 6.53 | 32.3 | 8 |
IRF5a, b | 7q32 | 0.606 | 0.2 | rs754386 | 6.1 | 98.9 | 5 |
DDX17b | 22q13.1 | 0.01 | 19.3 | rs2064088 | 10.89 | 70.8 | 6 |
CHI3L2b | 1p13.3 | 0.086 | 10.1 | rs1264898 | 9.48 | 64.9 | 2 |
PEX6 | 6p21.1 | 0.004 | 11.6 | rs1537638 | 7.2 | 66.7 | 5 |