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Table 2 Marked changes in linkage when sex was included as a covariate

From: Sex, age and generation effects on genome-wide linkage analysis of gene expression in transformed lymphoblasts

SNPa Trait LOD scores
Rs no. Location Chr:Mb Gene Location Chr:Mb Without sex With sex Change when sex included
rs1515504 6:11.1 SMCY Y:20.3 0.00 4.68 4.68
rs1885567 20:16.6 DDX3Y Y:13.5 0.02 4.12 4.11
rs1861606 12:22.3 SMC1L1 X:53.4 0.83 4.43 3.60
rs239345 16:23.3 UTY Y:14.0 0.11 3.69 3.57
rs216896 12:6.0 STS X:7.2 0.17 3.75 3.57
rs1959305 15:26.1 EIF1AX X:20.1 0.06 3.63 3.57
rs540224 3:39.0 EIF1AY Y:21.2 0.03 3.58 3.55
rs411602 18:6.1 EIF1AY Y:21.2 0.00 3.49 3.49
rs2027871 20:42.6 DDX3Y Y:13.5 0.00 3.43 3.43
rs1933121 14:37.4 EIF1AY Y:21.2 0.29 3.66 3.37
rs1884910 20:54.5 XIST X:13.2 5.55 1.03 -4.52
rs739495 19:40.4 USP9Y Y:13.4 4.76 0.36 -4.41
rs1892687 21:35.2 SMCY Y:20.3 4.40 0.00 -4.40
rs1979797 7:32.6 XIST X:13.2 4.82 0.43 -4.39
rs983740 10:20.8 DDX3Y Y:13.5 4.95 0.60 -4.35
rs1055403 7:30.7 EIF1AY Y:21.2 4.46 0.15 -4.30
rs715257 10:13.2 DDX3Y Y:13.5 4.16 0.00 -4.16
rs983740 10:20.8 EIF1AY Y:21.2 4.25 0.16 -4.09
rs715257 10:13.2 EIF1AY Y:21.2 4.07 0.00 -4.07
rs1364161 17:2.1 DDX3Y Y:13.5 4.14 0.09 -4.05
  1. aThe 10 top SNPs and traits for which there is evidence for linkage when sex either included or excluded as a covariate are shown as examples.