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PY - 2004 DA - 2004// TI - Kernel-based data fusion and its application to protein function prediction in yeast BT - Proceedings of the Pacific Symposium on Biocomputing ID - Lanckriet2004 ER - TY - JOUR AU - Borgwardt, K. M. AU - Ong, C. S. AU - Schönauer, S. AU - Vishwanathan, S. V. N. AU - Smola, A. J. AU - Kriegel, H. P. PY - 2005 DA - 2005// TI - Protein function prediction via graph kernels JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti1007 DO - 10.1093/bioinformatics/bti1007 ID - Borgwardt2005 ER - TY - JOUR AU - Cai, C. Z. AU - Han, L. Y. AU - Ji, Z. L. AU - Chen, Y. Z. PY - 2004 DA - 2004// TI - Enzyme family classification by support vector machines JO - Proteins VL - 55 UR - https://doi.org/10.1002/prot.20045 DO - 10.1002/prot.20045 ID - Cai2004 ER - TY - JOUR AU - Brown, S. AU - Gerlt, J. AU - Seffernick, J. AU - Babbitt, P. PY - 2006 DA - 2006// TI - A gold standard set of mechanistically diverse enzyme superfamilies JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-1-r8 DO - 10.1186/gb-2006-7-1-r8 ID - Brown2006 ER - TY - JOUR AU - Clare, A. AU - King, R. PY - 2002 DA - 2002// TI - Machine learning of functional class from phenotype data JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.1.160 DO - 10.1093/bioinformatics/18.1.160 ID - Clare2002 ER - TY - JOUR AU - Barutcuoglu, Z. AU - Schapire, R. AU - Troyanskaya, O. PY - 2006 DA - 2006// TI - Hierarchical multi-label prediction of gene function JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btk048 DO - 10.1093/bioinformatics/btk048 ID - Barutcuoglu2006 ER - TY - CHAP AU - Blockeel, H. AU - Schietgat, L. AU - Struyf, J. AU - Dzeroski, S. AU - Clare, A. PY - 2006 DA - 2006// TI - Decision trees for hierarchical multilabel classification: A case study in functional genomics BT - Proceedings of Principles and Practise of Knowledge Discovery in Databases ID - Blockeel2006 ER - TY - JOUR AU - Rousu, J. AU - Saunders, C. AU - Szedmak, S. AU - Shawe-Taylor, J. PY - 2006 DA - 2006// TI - Kernel-Based Learning of Hierarchical Multilabel Classification Models JO - The Journal of Machine Learning Research VL - 7 ID - Rousu2006 ER - TY - CHAP AU - Szedmak, S. AU - Shawe-Taylor, J. AU - Parado-Hernandez, E. PY - 2005 DA - 2005// TI - Learning via Linear Operators: Maximum Margin Regression BT - Tech. rep., Pascal Research Reports ID - Szedmak2005 ER - TY - CHAP AU - Syed, U. AU - Yona, G. ED - Samudrala, R. ED - McDermott, J. ED - Bumgarner, R. PY - 2008 DA - 2008// TI - Enzyme function prediction with interpretable models BT - Computational Systems Biology ID - Syed2008 ER - TY - CHAP AU - Tsochantaridis, I. AU - Hofmann, T. AU - Joachims, T. AU - Altun, Y. PY - 2004 DA - 2004// TI - Support vector machine learning for interdependent and structured output spaces BT - International Conference on Machine Learning PB - ACM Press New York CY - NY, USA ID - Tsochantaridis2004 ER - TY - CHAP AU - Taskar, B. AU - Guestrin, C. AU - Koller, D. PY - 2004 DA - 2004// TI - Max-Margin Markov Networks BT - Neural Information Processing Systems 2003 ID - Taskar2004 ER - TY - CHAP AU - Geurts, P. AU - Wehenkel, L. AU - d'Alche Buc, F. PY - 2006 DA - 2006// TI - Kernelizing the output of tree-based methods BT - Proceedings of the 23rd international conference on Machine learning ID - Geurts2006 ER - TY - CHAP AU - Hofmann, T. AU - Cai, L. AU - Ciaramita, M. PY - 2003 DA - 2003// TI - Learning with Taxonomies: Classifying Documents and Words BT - NIPS Workshop on Syntax, Semantics, and Statistics ID - Hofmann2003 ER - TY - CHAP AU - Cai, L. AU - Hofmann, T. 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PY - 2003 DA - 2003// TI - Accurate detection of very sparse sequence motifs BT - RECOMB '03: Proceedings of the seventh annual international conference on Research in computational molecular biology PB - ACM CY - New York, NY, USA UR - https://doi.org/10.1145/640075.640094 DO - 10.1145/640075.640094 ID - Heger2003 ER - TY - BOOK AU - Shawe-Taylor, J. AU - Cristianini, N. PY - 2004 DA - 2004// TI - Kernel Methods for Pattern Analysis UR - https://doi.org/10.1017/CBO9780511809682 DO - 10.1017/CBO9780511809682 ID - Shawe-Taylor2004 ER -