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Table 1 Abbreviations and short descriptions of variables.

From: Machine learning techniques to identify putative genes involved in nitrogen catabolite repression in the yeast Saccharomyces cerevisiae

Abbreviation

Description

NUM

Number of GATA boxes

1-GAP, 2-GAP, 3-GAP, B-GAP

First, second and third smallest, and biggest GATA gaps

M-GAP, MI-GAP, SD-GAP

Mean, median and standard deviation (sd) of all GATA gaps

i-MINDIST (i = 2,..., 5)

Minimum number of bp spanning over i GATA boxes

UP-i-MER (i = 1, 2, 3)

N{1, i}GATA

DOWN-i-MER (i = 1, 2, 3)

GATAN{1, i}

GAP-i-MER (i = 1, 2)

N{1, i}GATAN{1, i}

F-POS, L-POS

Positions of the first and of the last GATA boxes, resp.

M-POS, MI-POS, SD-POS

Mean, median and sd of the positions of all GATA boxes