Abbreviation | Description |
---|---|
NUM | Number of GATA boxes |
1-GAP, 2-GAP, 3-GAP, B-GAP | First, second and third smallest, and biggest GATA gaps |
M-GAP, MI-GAP, SD-GAP | Mean, median and standard deviation (sd) of all GATA gaps |
i-MINDIST (i = 2,..., 5) | Minimum number of bp spanning over i GATA boxes |
UP-i-MER (i = 1, 2, 3) | N{1, i}GATA |
DOWN-i-MER (i = 1, 2, 3) | GATAN{1, i} |
GAP-i-MER (i = 1, 2) | N{1, i}GATAN{1, i} |
F-POS, L-POS | Positions of the first and of the last GATA boxes, resp. |
M-POS, MI-POS, SD-POS | Mean, median and sd of the positions of all GATA boxes |