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Table 2 Associated bins at FDR 5% threshold (top), at FDR 50% threshold before (middle) and after exclusion of MHC region bins (bottom). A, B, C, ABC: collection designs, L2: two-marker likelihood, L3: naive likelihood.

From: Gene-based bin analysis of genome-wide association studies

FDR 5% with MHC L 3 L 2
A 3 2
B 3 6
C 2 2
ABC 4 6
FDR 50% with MHC L 3 L 2
A 6 6
B 14 7
C 6 28
ABC 20 33
FDR 50% w/o MHC L 3 L 2
A 2 0
B 1 1
C 0 0
ABC 8 10