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Table 2 Random effects BLUP models, their name in the contributed paper, assumed SNP variance and response variable used.

From: Comparison of analyses of the QTLMAS XII common dataset. I: Genomic selection

Model

Model [reference]

Number of markers

SNP variance

Respons variable

GPBLUP1

GBV(3)3328 [11]

3328

σ2G

Phenotype

GPBLUP2

GBV(3)1200 [11]

1200

σ2G

Phenotype

GPBLUP3

GBV(3)600 [11]

600

σ2G

Phenotype

GPBLUP4

GBV(3)300 [11]

300

σ2G

Phenotype

GPBLUP5

GBV(4)3328 [11]

3328

σ2G/3328

Phenotype

GPBLUP6

GBV(4)1200 [11]

1200

σ2G/1200

Phenotype

GPBLUP7

GBV(4)600 [11]

600

σ2G/600

Phenotype

GPBLUP8

GBV(4)300 [11]

300

σ2G/300

Phenotype

GPBLUP9

GEBV1 [14]

595

σ2G

Phenotype

GPBLUP10

GEBV2 [14]

595

σ2G/595

Phenotype

GPBLUP11

GEBV3 [14]

618

σ2G

EBV

GPBLUP12

GEBV4 [14]

618

σ2G/618

EBV

GPBLUP13

BLUP1 [15]

6000

σ2E

Phenotype

GPBLUP14

BLUP2 [15]

6000

σ2G/6000

Phenotype

GPBLUP15

RR2* [15]

6000

Ridge coefficient

Phenotype

GPBLUP16

RR2* [15]

6000

Ridge coefficient

EBV