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Table 2 Random effects BLUP models, their name in the contributed paper, assumed SNP variance and response variable used.

From: Comparison of analyses of the QTLMAS XII common dataset. I: Genomic selection

Model Model [reference] Number of markers SNP variance Respons variable
GPBLUP1 GBV(3)3328 [11] 3328 σ2G Phenotype
GPBLUP2 GBV(3)1200 [11] 1200 σ2G Phenotype
GPBLUP3 GBV(3)600 [11] 600 σ2G Phenotype
GPBLUP4 GBV(3)300 [11] 300 σ2G Phenotype
GPBLUP5 GBV(4)3328 [11] 3328 σ2G/3328 Phenotype
GPBLUP6 GBV(4)1200 [11] 1200 σ2G/1200 Phenotype
GPBLUP7 GBV(4)600 [11] 600 σ2G/600 Phenotype
GPBLUP8 GBV(4)300 [11] 300 σ2G/300 Phenotype
GPBLUP9 GEBV1 [14] 595 σ2G Phenotype
GPBLUP10 GEBV2 [14] 595 σ2G/595 Phenotype
GPBLUP11 GEBV3 [14] 618 σ2G EBV
GPBLUP12 GEBV4 [14] 618 σ2G/618 EBV
GPBLUP13 BLUP1 [15] 6000 σ2E Phenotype
GPBLUP14 BLUP2 [15] 6000 σ2G/6000 Phenotype
GPBLUP15 RR2* [15] 6000 Ridge coefficient Phenotype
GPBLUP16 RR2* [15] 6000 Ridge coefficient EBV