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Table 1 Starting parameters and estimates for the scenarios.

From: Bayesian genomic selection: the effect of haplotype length and priors

Scen.

Hap. Length

π 1

1st step σs1

2nd step σs1

σ 2 genom

σ 2 err

h 2

Corra gen3

Rega gen3

1

1

0.10

1.0

1.8

3.92

4.61

0.46

0.77

0.80

2

1

0.05

*

0.2

3.91

4.68

0.45

0.86

0.95

3

1

0.05

1.0

3.0

3.75

4.68

0.45

0.89

0.85

4

1

0.05

1.0

1.4

3.60

4.64

0.44

0.82

0.78

5

1

0.01

1.0

2.8

3.45

4.74

0.42

0.83

0.86

6

1

0.001

1.0

2.4

3.57

5.07

0.41

0.88

0.90

7

2

0.05

1.0

0.8

1.89

3.42

0.36

0.97

0.99

8

2

0.005

1.0

0.8

2.36

3.82

0.38

0.89

0.91

9

5

0.05

Optimize

0.17

1.55

3.09

0.33

0.99

1.01

10

5

0.01

Optimize

0.19

1.48

3.10

0.32

0.99

0.99

11

5

0.01

1.0

0.30

1.49

3.12

0.32

0.99

1.00

12

10

0.02

Optimize

0.23

1.50

3.08

0.33

0.98

0.99

13

20

0.04

Optimize

0.24

1.49

3.10

0.32

0.99

0.99

14

40

0.08

Optimize

0.24

1.53

3.05

0.33

0.97

0.99

  1. a GEBV of full data vs. GEBV of joint predicted data.
  2. *Scenario 2 omits the 1st step.