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Table 1 Simulated QTL.

From: Comparison of analyses of the QTLMAS XII common dataset. II: genome-wide association and fine mapping

Namea Chrb Location (cM) Effectc Minor allele frequency Genetic variance % of phenotypic variance explained Estimated effect in multiple regression
M1 1 20.00 0.62 0.28 0.15 3.50 0.61
S1 1 31.87 0.01 0.44 0.00 0.00 0.06
S2 1 33.16 0.00 0.30 0.00 0.00 0.04
M2 1 40.00 0.56 0.07 0.04 0.91 0.62
S3 1 50.37 0.06 0.46 0.00 0.04 0.08
S4 1 52.50 0.05 0.40 0.00 0.03 0.07
S5 1 62.21 0.00 0.29 0.00 0.00 0.02
M3 1 77.23 0.37 0.29 0.06 1.29 0.42
S6 1 86.68 0.01 0.30 0.00 0.00 0.09
S7 1 93.99 0.01 0.47 0.00 0.00 0.01
S8 2 2.25 0.01 0.39 0.00 0.00 0.06
S9 2 6.52 0.07 0.38 0.00 0.06 0.09
M4 2 27.41 0.35 0.44 0.06 1.38 0.44
M5 2 30.00 0.33 0.21 0.04 0.82 0.25
S10 2 32.49 0.04 0.41 0.00 0.02 0.07
S11 2 45.71 0.01 0.09 0.00 0.00 0.07
S12 2 48.22 0.04 0.08 0.00 0.01 0.06
M6 2 48.62 0.37 0.40 0.07 1.50 0.39
M7 2 74.91 0.50 0.18 0.07 1.63 0.46
S13 2 89.04 0.12 0.22 0.01 0.12 0.15
S14 2 93.54 0.25 0.32 0.03 0.61 0.22
S15 2 95.66 0.02 0.29 0.00 0.01 0.12
S16 2 97.83 0.13 0.41 0.01 0.19 0.14
S17 3 0.70 0.03 0.00 0.00 0.00 -d
S18 3 7.89 0.01 0.46 0.00 0.00 0.04
M8 3 14.91 0.30 0.40 0.04 0.98 0.27
S19 3 21.07 0.02 0.26 0.00 0.00 0.00
S20 3 29.81 0.07 0.29 0.00 0.04 0.05
M9 3 60.00 0.68 0.07 0.06 1.29 0.70
M10 4 3.21 0.61 0.39 0.18 4.01 0.64
S21 4 3.44 0.08 0.32 0.00 0.06 0.10
S22 4 3.88 0.02 0.23 0.00 0.00 0.02
S23 4 10.00 0.01 0.04 0.00 0.00 0.06
S24 4 16.35 0.00 0.36 0.00 0.00 0.11
S25 4 19.84 0.07 0.47 0.00 0.05 0.10
M11 4 36.93 0.34 0.24 0.04 0.95 0.37
S26 4 69.56 0.00 0.08 0.00 0.00 0.01
M12 4 76.06 0.58 0.41 0.16 3.70 0.58
M13 4 96.49 0.29 0.19 0.03 0.59 0.38
M14 5 5.15 0.18 0.21 0.01 0.24 0.25
S27 5 12.98 0.09 0.44 0.00 0.10 0.09
S28 5 28.64 0.00 0.13 0.00 0.00 0.05
S29 5 68.39 0.12 0.44 0.01 0.15 0.17
S30 5 68.48 0.00 0.43 0.00 0.00 0.02
S31 5 72.54 0.00 0.12 0.00 0.00 0.06
S32 5 77.02 0.13 0.25 0.01 0.14 0.15
S33 5 80.00 0.08 0.11 0.00 0.03 0.05
S34 5 82.14 0.01 0.36 0.00 0.00 0.08
M15 5 93.50 0.75 0.26 0.22 4.97 0.75
S35 5 98.32 0.01 0.45 0.00 0.00 0.02
  1. aQTL labelled M are major QTL, known to be detectable in this dataset based on the results from our multiple regression. QTL labelled S are secondary QTL that were not detected, with the significance threshold used, in our multiple regression. bChromosome. cAverage effect of allelic substitution (absolute value). dCould not be estimated because the QTL was fixed in the population.