SNP1
|
SNP2 a
|
logPb
|
"1/2" genotypec
|
"2/2" genotyped
|
Accumulated Variance (%)
|
Single QTL allelic effect (simulated)g
|
---|
196
|
-
|
18.65
|
0.33
|
0.62
|
1.78
|
0.71 (0.62)
|
402
|
-
|
5.59
|
0.08
|
0.23
|
2.28
|
0.85 (0.56)
|
540e
|
3219
|
10.51 (7.75)
|
-0.18 (-0.09)
|
-0.30 (0.08)
|
3.53
| |
778
|
-
|
7.34
|
0.23
|
0.45
|
4.18
|
0.42 (0.37)
|
1257f
|
3689
|
9.15 (6.63)
|
-0.56 (-0.24)
|
0.46 (-0.17)
|
5.56
| |
1270
|
-
|
7.60
|
0.23
|
0.44
|
6.23
|
0.50 (0.35)
|
1483
|
-
|
10.02
|
-0.14
|
-0.36
|
7.13
|
0.43 (0.37)
|
2133
|
-
|
5.89
|
0.10
|
0.31
|
7.65
|
0.39 (0.30)
|
3033
|
-
|
20.52
|
0.31
|
0.66
|
9.54
|
0.68 (0.61)
|
3765
|
-
|
11.91
|
0.25
|
0.48
|
10.62
|
0.56 (0.58)
|
4935
|
-
|
18.38
|
-0.33
|
-0.71
|
12.35
|
0.70 (0.75)
|
- a: SNP2 column has a value only for epistatic pairs.
- b: the-LOG10 transformed P value for single significant SNPs, or the epistatic pairs in the nested test order. The -LOG10 (P) value for epistasis tests are in brackets.
- c: estimate of the "1/2" genotype in contrast to the "1/1" genotype. The estimates of SNP2 are in brackets.
- d: estimate of the "2/2" genotype in contrast to the "1/1" genotype. The estimates of SNP2 are in brackets.
- e: estimates of the pair-wise interactions: 0.51, 0.23, 0.07 and 0.66 for "1/2 × 1/2", "2/2 × 1/2", "1/2 × 2/2" and "2/2 × 2/2", respectively.
- f: estimates of the pair-wise interactions: 0.57, -0.55, 0.53 and -0.47 for "1/2 × 1/2", "2/2 × 1/2", "1/2 × 2/2" and "2/2 × 2/2", respectively.
- g: Estimated allelic effect from the single SNP GRAMMAR model; the simulated value is taken from the nearest simulated QTL as provided by the organisers.