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Table 3 Measuring haplotype reconstruction uncertainty via simulations.

From: Haplotyping via minimum recombinant paradigm

Data N M SNP Length Av. G 1/2 G Phased Correct CV
Sheep 1070 12 0 90 7.6 34 51 82.5 99.7 0.001
Pigs 1186 33 28 15 0.5 27.5 67 78.1 99.9 0.0003
Sim. 5939 1000 1000 100 0.1 98.75 98.75 94.1 99.2 0.0002
  1. There were 100 simulations per data set. N is the pedigree size. M is the number of markers. SNP is the number of SNP among all markers. Length is the totalcM of the region considered. Av. is the average inter-locus distance incM. G is the percentage of all individuals in pedigree with all loci fully genotyped. 1/2 G is the percentage of all individuals in pedigree with at least 1/2 of loci fully genotyped. Phased is the percentage of phased alleles (or loci) from full genotypes. Correct is the percentage of correctly phased alleles from all phased. CV is the coefficient of variation of correct phases across simulations.