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Table 4 Comparison between fully or partially implementing MRHC.

From: Haplotyping via minimum recombinant paradigm

Data

Sheep

Pigs

Simulated

Rules

4

6

4

6

4

6

Phased

82.5

85.1

78.1

82.3

93.5

95.3

Correct

99.7

99.3

99.9

99.6

98.8

98.6

Time

1.9

5

5.6

25.2

3460

16339

  1. The original MRHC algorithm contains 6 rules. The first four can be implemented on their own to phase most alleles. Phased was the percentage of phased alleles originally present in full genotypes. Correct is the percentage of correctly phased alleles from all phased. Time measures average computing requirement in seconds. One hundred simulations were used to assess performance in pigs and sheep, and true and predicted haplotypes were compared in the simulated data.
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BMC Proceedings

ISSN: 1753-6561

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