Table 1 Location of 12 most significant genes using human genome sequence, porcine syntenic regions, and draft porcine genome assembly (version 6 and 7, respectively)
name | Human chr. | Human genome position | Pig chr. by synteny | position | Pig chr by blast (v6) | position | Pig chr by blast (v7) | position |
|---|---|---|---|---|---|---|---|---|
Anpep | 15 | 88,129,550..88,135,197 | / | / | 7 | 59,359,968..59,347,462 | 7 | 60,228,156..60,227,885 |
Eif1b | 3 | 40,326,322..40,328,830 | 13 | 40–45 cM | 13 | 10,798,899..10,801,421 | 13 | 16,118,664..16,119,048 |
Gadd45b | 19 | 2,427,260..2,428,668 | 2 | 60–65 cM | / | / | 17 | 13,001,040..13.001,021 |
Crem | 10 | 35,535,828..35,540,700 | 10 | 94–101 cM | 10 | 25,761,249..25,770,177 | 10 | 35,728,178..35,728,699 |
A2m | 12 | 9,116,279..9,126,679 | 5 | 90–95 cM | 5 | 39,159,061..39,164,309 | 5 | 46,924,367..46,924,494 |
Ckb | 14 | 103,055,770..103,056,563 | 7 | 155–160 cM | X | 32,225,303..32,224,867 | X | 41,876,923..41,876,617 |
Ldlr | 19 | 11,091,910..11,092,048 | 2 | 63–67 cM | / | / | 1 | 65,742,487..65,742,468 |
Star | 8 | 38,120,950..38,127,503 | 15 | 58–63 cM | / | / | 8 | 56,056,948..56,056,928 |
Acox1 | 17 | 71,454,314..71,457,157 | 12 | 103–107 cM | / | / | 12 | 1,911,202..1,911,412 |
Rnf2 | 9 | 6,658,602..6,659,714 | 1 | 85–90 cM | 1 | 137,816,861..137,816,168 | 1 | 155,801,1077..155,800,384 |
Cited1 | X | 71,438,228..71,438,760 | X human | / | X | 25,125,348..25,125,009 | X | 33,011,256..33,010,917 |
Cd83 | / | / | / | / | 7 | 9,859,712..9,859,943 | 7 | 10,204,325..10,204,556 |