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Table 1 Summary of gene-based CNV associations for GADA based segmentation (Wilcoxon rank-sum test)

From: Copy number variation in the Framingham Heart Study

   

% Significant genesc

Chr

Affymetrix genesa

Genotyped genesb

GADA

CNAM

1

1650

1500

5.12

12.60

2

1046

974

0.72

16.32

3

893

829

0.36

13.51

4

661

634

1.31

1.57

5

722

680

7.45

22.35

6

883

822

1.84

18.86

7

709

655

3.09

6.87

8

539

505

10.18

1.78

9

632

582

0.87

4.81

10

636

603

1.84

8.96

11

1028

907

1.68

4.85

12

871

799

4.80

15.14

13

295

287

8.81

10.45

14

527

474

4.25

12.66

15

507

474

1.92

9.92

16

580

483

5.64

3.52

17

851

712

8.09

0.14

18

241

241

4.17

1.66

19

912

713

1.51

0.14

20

470

439

2.75

5.47

21

201

187

0

9.09

22

365

326

3.12

0

Total/Average

15219

13826

3.61

8.62

  1. aOverall number of genes as defined by Affymetrix annotation files
  2. bNumber of those genes for which we had SNP intensity data
  3. cPercentage of those genes in which associated CNV was detected at the p = 0.05 value (uncorrected for multiple comparisons) using GADA and CNAM
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BMC Proceedings

ISSN: 1753-6561

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